Key | Value |
---|---|
FileSize | 916512 |
MD5 | 6FA82CC1457BD460322F7FF5D4E395A2 |
PackageDescription | Test data for HTSlib HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. . This package contains test files and scripts for the HTSlib. |
PackageMaintainer | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
PackageName | htslib-test |
PackageSection | science |
PackageVersion | 1.9-12~deb10u1 |
SHA-1 | 1DAED69BD9ABE7CD828556ADE84246C40E4924E0 |
SHA-256 | C75705F0FE9B01C9F0B3F09CD30AB499FA3B245DA4CF51A590C2478036237498 |
hashlookup:children-total | 199 |
hashlookup:trust | 50 |
The searched file hash includes 199 children files known and seen by metalookup. A sample is included below:
Key | Value |
---|---|
FileName | ./usr/src/debug/htslib-1.9/hfile.c |
FileSize | 29849 |
MD5 | B1D5F5C1C5AD8ECF860178875F033413 |
SHA-1 | 02CB731EA19C7760CE1242F285595F247203DF1D |
SHA-256 | FAF556ED4BB507CCAE7F567A64B1D57689F3E8C0C1283A4344491A32DB948AD6 |
SSDEEP | 384:0G2HRtlgWfW8/20KnHfK0ru0AqB3Cbc2pPTgVYu:f2H7vWG20KnHfK0ru0Aw3Cbc2pPTYYu |
TLSH | T133D2C8161DB729325711A96977C7C8DCE21DA10F213CEA10B80EB2B47F99068D3F66BD |
Key | Value |
---|---|
FileName | ./usr/src/debug/htslib-1.9/bcf_sr_sort.c |
FileSize | 21895 |
MD5 | AC5E13E97D5EB0037D161E84AEF9AA7D |
SHA-1 | 04B11A304CA2FA812D1E06F17C68FFB16708F5CE |
SHA-256 | 3B7FE4A92E5167E8AE9F4D74DC43DD3B074A59B62BF7CF782B94693EE71FBC12 |
SSDEEP | 384:8KWDQMNATi6DDvc+XgRuy1yUowuKeNBFFKn/XS8ZS:zWeTdrcyo12wuDZs/XXS |
TLSH | T1F8A28409C85781813E7329B8CB5F1D9122C99A2362C8D928FE1DB2782FC557AC2F5F5C |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/test/test_bgzf.c |
FileSize | 24179 |
MD5 | 73E2D5F68ECC51CE7BF9DD7139F3B990 |
SHA-1 | 05A63D559FA57A1E9E6C351C31FBA5A289859657 |
SHA-256 | BC61064DFFC785D4A4C0EA6D0CD1D8C45729106471BB2BDE3D94B098B9D7D850 |
SSDEEP | 384:AGuiHYhSNVmrfrvvHxh21k7P/c+qLTrF+EJbum7QKv6PQIEXYK8RlqrsWTwzPBBM:TuiHYhSNVmjrvvHxh21k7P/5qLTrF+EP |
TLSH | T1B1B2621659EF6007B592593B9FCF882C222996C3131DCA04BE6DAF40BF4647C5AFAF05 |
Key | Value |
---|---|
FileName | ./usr/share/doc/staden-io-lib/test/data/c1#clip.sam |
FileSize | 337 |
MD5 | 85FE4FD282E64ADB93B5B7789F2632F0 |
SHA-1 | 06FC71F18C86EE0B3C2D0FB8DD8B7A5605A1C60C |
SHA-256 | F522DE0896725DD706BED7F13E50B51747BDA1CF1819C87B9B754262851186AB |
SSDEEP | 6:hAc050o3MU108N0l3/un9o3GxvYAMsPHPjVA9o3/jV94Un3icV9HkE/f:hnSl1PON6YqvJrvJ/y89EA |
TLSH | T14AE042102F941CA2790D68504E46C8FB99EE110CBD8D19A4DAA8F3003F9DBC06576CAF |
Key | Value |
---|---|
FileName | ./usr/src/debug/htslib-1.9/cram/pooled_alloc.c |
FileSize | 4735 |
MD5 | FA0807FA36823EE76E3E1C64D2E2CD23 |
SHA-1 | 079E018AE70C1FA9944F3D6081FCF0FF70C08164 |
SHA-256 | 4725BAF16585CE4C4E0417AADF35090B54B4D1BF440E2AD18378ACF75FD24063 |
SSDEEP | 96:mdJxJzi/XQ3m3zxFyThT1/UoNOMTV8cJ6T0ffCUFVWVkFqYFcb:mzH0XQ3m3FKhx/3zqcJ6mfHFUM6b |
TLSH | T10DA1769600C76042B882667A5FC7D040626CE00B775BEF30B91E63A87F5C82C9EF6F55 |
Key | Value |
---|---|
FileName | ./usr/src/debug/htslib-1.9/kstring.c |
FileSize | 9317 |
MD5 | A6F969C283152FA180A43CAC1CE20DF6 |
SHA-1 | 094E6E900D3A1ADDF71B40288C8E9F79DF9870BD |
SHA-256 | B7A7A7624763FC8572738A4055DB2E1C3A3C592D3CC64DF83D10FB8CB255A923 |
SSDEEP | 192:IvQHnBgPiYEdTlrtjKW4Ryg5SIUqclUWRTyLlLjwgO/PH0h1xQDdk5/:IvyuPiYGlgZLpsTyLV0pnH05QRE/ |
TLSH | T13D1297A1D3594E439B56237E8D17D1CC626EF076F4E6BCA9AC4DB1D4B90909E01B3C32 |
Key | Value |
---|---|
FileName | ./usr/src/debug/htslib-1.9/cram/cram_io.h |
FileSize | 27866 |
MD5 | 5FC6DD0703EF7CDDF2791D4430209137 |
SHA-1 | 0C4644614089185E6D9487C681C01E980737BF4C |
SHA-256 | 4349EDCC2E1BBEEEBBC981E251746D2B545698BA5E96DE8D3B394BAFE37C45B1 |
SSDEEP | 768:GYFodkNobyvcXchRqUyeFDF0FuVFkGvqlXCXy:jod3JuQLeFDF0FuVFkWqmy |
TLSH | T14FC2A6526CD32594E117C5AC43BD214CEA08B45B31CAAE09F96D607C2F83CD6E2FEE95 |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/test/thrash_threads6.c |
FileSize | 3405 |
MD5 | C20FA2883C4E5DA9A35421B3DD3C74FC |
SHA-1 | 0CE127ECA71865A957B6C8F2163D59859669A7CE |
SHA-256 | C6ED122A1DE852711704431976718474CF830C0415C79BFB86BFDDED7D23F7A6 |
SSDEEP | 48:I1kaJHlxE35QHOs5eNm3oEFuJitLAciA5YGUuR5/tPZ5k3om0cm1feW3Ay84:I5upQHnoZitMS1z/NZ5k3o/ReW3Ay84 |
TLSH | T10F6176AD989B07672963A13DAF9B38856246A00B51CDED007D1EE3409F054F991FAFB1 |
Key | Value |
---|---|
FileName | ./usr/share/doc/tabix/copyright |
FileSize | 5762 |
MD5 | 5537164C7A02FF36CC67707932194AA5 |
SHA-1 | 0D96A2A354139B380813F081A5B13392E2A95E14 |
SHA-256 | 96B203EF316009FC385FC5DE4F490170A5B66E0D4098A8C19B504A8389E6CDD6 |
SSDEEP | 96:N+gC7z8lJjJz8RO3iZ3z9wTrlJHJzs9t3i23zNUfNLH4+8P+rQHXebg:nc8rVYRO3iZ3xirrpg9t3i23hUFLH4U0 |
TLSH | T175C1F89B3E8407B759E5E7D52AAA78C0F51E902F3B371A04386DE284673702DD8BF491 |
Key | Value |
---|---|
FileName | ./usr/lib/R/site-library/Rhtslib/testdata/test-vcf-hdr-in.vcf |
FileSize | 2024 |
MD5 | E30FAFAF3430F91D0A6DF845F6EE8AC0 |
SHA-1 | 10AC3206B4823242918C5FB15BC7EB9BAA51D8D4 |
SHA-256 | 96C01419AAA466E8BEA034DA890181119FBE933804078E9DC007E30CE3C3F876 |
SSDEEP | 24:wjrAqNuUNpI5b4TqnofmlCmFIjhz4qDX8xcfSN1++kfq/m1i1QY1A/f1e15yu1qW:vq17+4TmtIz4YNq/6rYT |
TLSH | T18E4160943FEEF45A8C9D43423AC17E81593404A0E3850ECA7CAF41AA8FAC58CE265782 |