Key | Value |
---|---|
FileSize | 820332 |
MD5 | 93B07DE8249A360B22D5D4CAEDC1DF41 |
PackageDescription | Test data for HTSlib HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. . This package contains test files and scripts for the HTSlib. |
PackageMaintainer | Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com> |
PackageName | htslib-test |
PackageSection | science |
PackageVersion | 1.7-2 |
SHA-1 | 8A4AE527E360E50F9F9A9B0E7A71F2804C281AB0 |
SHA-256 | FAD7C77059BC0DD8F11E74F83A21647ECEBC654C0549A35D41C2332EA84DC548 |
hashlookup:children-total | 175 |
hashlookup:trust | 50 |
The searched file hash includes 175 children files known and seen by metalookup. A sample is included below:
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/synced_bcf_reader.c |
FileSize | 37984 |
MD5 | AD23F7A522D04915D1412E2D1C5F3236 |
SHA-1 | 02213AB88A0776B342567D3BE7ED64E79607B866 |
SHA-256 | 40ECD8322483023768B1C27FDFDA0A42D4C058ED63F7E4D0819947838AD21324 |
SSDEEP | 384:JGsP6m73nCx3cMnn7pv3HbW6chpaBpzmdQjyI1O2RjO6NZ1nTzZMzGt90tT:ssP6I3nCxJU7PO6IE8jOSZdGzGt90tT |
TLSH | T1590322494C877382A723B4BDE78AA8046254C4179099DC50FF5DE1797FC80ACEAF5FA8 |
Key | Value |
---|---|
FileName | ./usr/include/htslib/cram/cram_samtools.h |
FileSize | 3583 |
MD5 | AE977C564CC636C550A56E948B644F9A |
SHA-1 | 03B03755AF520964BE081DC212389241EB1C2C65 |
SHA-256 | 1F3A46B7887CCA4500FEC80AA4D80433E8F8A9A821868DD4F6FCD4132ACD109E |
SSDEEP | 96:VOUJ6UJzQ/X23o3zxFyT5HgJVX4FP230xaD/Ot10bAHA7EvQ:VOY6Y+X23o3FK5KPpAHJQ |
TLSH | T1DA713D8307C82996B8612D79175E65D03434E4372AB26E8D3E9FE4DC3FAA41D60F66C8 |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/bgzf.c |
FileSize | 58923 |
MD5 | 850398015DF9E6F53495D7AA1363EAA8 |
SHA-1 | 0541DBFE77C704C9837C91F3E4388E62742916D1 |
SHA-256 | 0154EB5710531999942B61312A871612B626475BFCCEB5FF99C4A0B55DD8E115 |
SSDEEP | 1536:Iz1GhAfx2+a2jwjA3cr7ipqV8rbH28rY/1+Td2:kUhAfxHwhdtkY |
TLSH | T1E543748648F710821652582CAFDBA00AF2295517431DF9A0FD2ED2647F8C478F6F5FAE |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/thread_pool.c |
FileSize | 40171 |
MD5 | 0583C2540CEBF2DFB194D344D271357D |
SHA-1 | 0653731AA5474DB757DE212925FD4784B72C86DC |
SHA-256 | 8BF6439D801E281A4196EBC9F22C1D46084F5CAEF19112A170BF8FB7108562B0 |
SSDEEP | 768:vbIoLiD8ssJeLfkyl4lFchPF/VptSYJh9BkX7AbVxbpUgHXJdvwB:j7iD1RPF15i2vH0 |
TLSH | T1C8034285ACAF115015A7D835579F7886F766A01B236AE526F8CED1A03F8C020F37CED5 |
Key | Value |
---|---|
FileName | ./usr/share/doc/staden-io-lib/test/data/c1#clip.sam |
FileSize | 337 |
MD5 | 85FE4FD282E64ADB93B5B7789F2632F0 |
SHA-1 | 06FC71F18C86EE0B3C2D0FB8DD8B7A5605A1C60C |
SHA-256 | F522DE0896725DD706BED7F13E50B51747BDA1CF1819C87B9B754262851186AB |
SSDEEP | 6:hAc050o3MU108N0l3/un9o3GxvYAMsPHPjVA9o3/jV94Un3icV9HkE/f:hnSl1PON6YqvJrvJ/y89EA |
TLSH | T14AE042102F941CA2790D68504E46C8FB99EE110CBD8D19A4DAA8F3003F9DBC06576CAF |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/faidx.c |
FileSize | 16426 |
MD5 | 5E8211D07014E06A7EC61AC3C6689A05 |
SHA-1 | 08DC6D2B18A64B848AFD3A2EC2F550177E6592BB |
SHA-256 | B5E198816E0E6C5A047B4E21E3FEF2CD72C4607A213234C816F0CF3B38262D71 |
SSDEEP | 384:kzGtx0eaJtFmNQSCruWPoN4eMPTVSPczs:16jIQ44eMP5SPP |
TLSH | T1EE72815B80E720173623793D4F8F64196329A54F321ECC143D5C62A4BF9587EAAFAF12 |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/realn.c |
FileSize | 8636 |
MD5 | B57BBC26C59A12DDEA534A64F71CDC9F |
SHA-1 | 09CCBC7985869E373DD7105E22923868C1947A08 |
SHA-256 | 671C13578406656BFE502E8B9BD23D3B82958A5C6DAD5D725A42DB22529E0AC1 |
SSDEEP | 192:8zQHnp9AfCSCwjnQV5UDFUpxTEC7vRFm9AWQmVx98p2oWnqZ9Dk49AvSQmVji94M:8zGp9ARjnQV2KdA9AWfVxap2Pz49A6fm |
TLSH | T16902300956D316635E13ABBC8F8B915C5227B813658AD909BD4E62D0BF308790BB2FC7 |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/test/thrash_threads6.c |
FileSize | 3405 |
MD5 | C20FA2883C4E5DA9A35421B3DD3C74FC |
SHA-1 | 0CE127ECA71865A957B6C8F2163D59859669A7CE |
SHA-256 | C6ED122A1DE852711704431976718474CF830C0415C79BFB86BFDDED7D23F7A6 |
SSDEEP | 48:I1kaJHlxE35QHOs5eNm3oEFuJitLAciA5YGUuR5/tPZ5k3om0cm1feW3Ay84:I5upQHnoZitMS1z/NZ5k3o/ReW3Ay84 |
TLSH | T10F6176AD989B07672963A13DAF9B38856246A00B51CDED007D1EE3409F054F991FAFB1 |
Key | Value |
---|---|
FileName | ./usr/lib/R/site-library/Rhtslib/testdata/test-vcf-hdr-in.vcf |
FileSize | 2024 |
MD5 | E30FAFAF3430F91D0A6DF845F6EE8AC0 |
SHA-1 | 10AC3206B4823242918C5FB15BC7EB9BAA51D8D4 |
SHA-256 | 96C01419AAA466E8BEA034DA890181119FBE933804078E9DC007E30CE3C3F876 |
SSDEEP | 24:wjrAqNuUNpI5b4TqnofmlCmFIjhz4qDX8xcfSN1++kfq/m1i1QY1A/f1e15yu1qW:vq17+4TmtIz4YNq/6rYT |
TLSH | T18E4160943FEEF45A8C9D43423AC17E81593404A0E3850ECA7CAF41AA8FAC58CE265782 |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/bgzip.c |
FileSize | 12767 |
MD5 | 9B48C572CE402D38E95A0537E517107D |
SHA-1 | 10F970BED675EEC5D00ACC8A6BB89BDB78C0FEFB |
SHA-256 | E5E24EA8700F55FF25CC08319F33C27F168902CB44D97D9C496BA4D5B1E91B29 |
SSDEEP | 192:mjjQHdTj77xWTEimZ6X454lEOq5yGKKpZ6V2Qy8ZDtKEfMmaY4aqayS4Wq5y9Pfy:mjjYTjRM2a3Xd8SU |
TLSH | T13D4251284CA712971273457E9B539C2922AAC0079297EF00BD0D61D06FD513AAEFDBB9 |