Key | Value |
---|---|
FileSize | 1035580 |
MD5 | 22B167D0001C65D6B220448834FE4894 |
PackageDescription | Test data for HTSlib HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. . This package contains test files and scripts for the HTSlib. |
PackageMaintainer | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
PackageName | htslib-test |
PackageSection | science |
PackageVersion | 1.11-4 |
SHA-1 | B4A6068F11A42BBA17F43CFEA5855A685C3502E1 |
SHA-256 | 719344BF5684C7F23CB221B0EA18AB0B99D4A4BC90C1A888E4203A7ED47FCBE4 |
hashlookup:children-total | 271 |
hashlookup:trust | 50 |
The searched file hash includes 271 children files known and seen by metalookup. A sample is included below:
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/test/tabix/vcf_file.vcf |
FileSize | 2543 |
MD5 | BD2A9FDC831B688AA9ED92C1D85BC9E6 |
SHA-1 | 0198367E1DC23DE203AE5DBAED467747DD9ED05B |
SHA-256 | A98D17A333EAA5E4688BC6A8ED1AA7AAB5BF00C25F97DCE191C319E1717FACD4 |
SSDEEP | 48:2tYby6LLNhFOuufIj7g1sHnOxyFiRi+fi6iVMsVoRo/oOriOI:2tb0zvb6hfaMs4mrru |
TLSH | T1E35121C1B8770D54C79E47032ADA7C883D389365E38581945EB3C8E58F9278AE991361 |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/test/index.vcf |
FileSize | 68888 |
MD5 | 0E408B5FDCE43C92A43603099F58C8B7 |
SHA-1 | 01C7BC7E5FD868B4894E798FC376ADE177BF3786 |
SHA-256 | D99C0251010DAE47B019B85BB732865FB910CB680E7B43EA3A4B49FCF8216304 |
SSDEEP | 192:rtNIT0xkF9RGemePQYwN3Fzr48ClBJTmvFCDTQ9fcxr6zLZMJ9sNx7iz2R4tMjDi:hNITBYNFc81Uoc5gLGJM6gAfRQ0 |
TLSH | T14363533D73F683C8F3A58789CA6C64FB1D35E698B12C0C41D71A0ABDBC20A2764F5695 |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/test/xx#MD.sam |
FileSize | 1070 |
MD5 | 9BDB8A927048138EBFF3E6CC453C2014 |
SHA-1 | 050295919747A5FB40B15D891461ED6D2D9A31A6 |
SHA-256 | C32F82A9D4EAEE4FCAD4EBDFEF6AAE5B2120A097FF78F0486239A9E7A316EC2E |
SSDEEP | 12:hL3RFUqoVAP3EniczxmVxQpcKmyNPW7633WDuuAkDnAWNpczxeWJkWEWM6VxBiF/:hjzoVAP36i6/p3myN53GCNkrNp6K3Yv0 |
TLSH | T14B11177979DE65290F832CC718F7CB7F6C4C009E95291E9DC0D8A2266E96341B98E08E |
Key | Value |
---|---|
FileName | ./usr/share/doc/staden-io-lib/test/data/c1#clip.sam |
FileSize | 337 |
MD5 | 85FE4FD282E64ADB93B5B7789F2632F0 |
SHA-1 | 06FC71F18C86EE0B3C2D0FB8DD8B7A5605A1C60C |
SHA-256 | F522DE0896725DD706BED7F13E50B51747BDA1CF1819C87B9B754262851186AB |
SSDEEP | 6:hAc050o3MU108N0l3/un9o3GxvYAMsPHPjVA9o3/jV94Un3icV9HkE/f:hnSl1PON6YqvJrvJ/y89EA |
TLSH | T14AE042102F941CA2790D68504E46C8FB99EE110CBD8D19A4DAA8F3003F9DBC06576CAF |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/test/xx.fa |
FileSize | 86 |
MD5 | FA89A7556F0A9D332564F7BD5BB5D874 |
SHA-1 | 08E37293E7AAB4FE46C1145F4971AB1C7B70C706 |
SHA-256 | A1D5CCB865DC067319836CC6E50EB9A176AE3C1917745B93E70A55A83F4CFCCB |
SSDEEP | 3:ZtktkkkxxHgyktkkkxxHjEktktkkkxxHUmmm3n:vkcW3c+Wkcb |
TLSH |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/textutils.c |
FileSize | 11957 |
MD5 | 36C9786CB7F0B7AF9FAA12A00B8F1585 |
SHA-1 | 090D4A68FB6509361CAEB9FFE99D4B0945716361 |
SHA-256 | 6C2123C3732D2627BE853289B272F51A327C89FCB948EF0A15FAE7BE2B7F08DF |
SSDEEP | 192:FOQHnlmdi5k70Jq0Sq5WS8MJqMgsJ6CkWITQyhZ6NejLRO2th/q0kr3FaXXU5h1T:AGlwq1YTjld/pu3FCjG6u |
TLSH | T158328320A8F36521AA1B9B3E471FC064A55D7C07202DECD47C8CD2B9EF450A256FBEE5 |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/header.h |
FileSize | 10466 |
MD5 | 52A97773CDA1CD86037F55BBEEDE1DEA |
SHA-1 | 098C0082733DF5D622B3F9E87355B0A2F8FCE18D |
SHA-256 | D5531FB9192363003D413F374BF173D94CB2D43C29B31E6A06DE8D3E8161F4F8 |
SSDEEP | 192:czH0XQ3m3FKwMEAM5fOH2OdqHDiYn7R3KpZult/B76Y8wBCnIDGVwr/qIdkHn:GHaqYF9MfCOH7rYr37y2r/qIq |
TLSH | T1F9229546A039569108C10BB19B5E9860564FC02B36E9E540B89F737C2F42DDEFAB7FC1 |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/test/test-parse-reg.c |
FileSize | 7064 |
MD5 | E6E6C83335DA58F489E12CCBE0C4FA5B |
SHA-1 | 09F79FFA350A75EB40F6F2AA66ACF73BB3C54692 |
SHA-256 | 4B88749682BBFD9F5A51F75C0F47D0D47C61FDA517DCC87F9B4FDA317461EC4F |
SSDEEP | 192:fQHDaAM8n99fZl7Mx6kJNe/9hPpwt71r4+E+iaZivKRRvKReDjPDJNTs7vkXC9KU:fKaWdexEfS2R |
TLSH | T1D4E1120C1607161136E2C0FC33BBEC939274910FA6A9A885FF8DB1D89F8C478E5F59A1 |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/test/index.bam.csi |
FileSize | 130 |
MD5 | F070EB78B8B707A0A3323E1DC167E126 |
SHA-1 | 0CEE43D5E5D7D1AF749A01AD390AD4608AE2901C |
SHA-256 | 058F24A6FA124531A9C8B0ECCF3956C93BB6A71709D9BA469DC58D9CFF45ADA6 |
SSDEEP | 3:FtrlA+AsTBwFFfVwXZrP9fyWuVFCFwKpbRlA+a:XrStv/gZ79q7FCFzST |
TLSH | T16CC0222030882A02E82082383C808C2AFA0E2308032B822C03A8A03A3080230A080820 |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/test/bcf-sr/merge.noidx.b.vcf |
FileSize | 634 |
MD5 | 6C8D7E5AA91EC8B7EB97765292C80AF4 |
SHA-1 | 0EBB5CC09D7BE1BF1B2AD99A47002B4FF404791E |
SHA-256 | B46133F4508FFD4CFF886A855C3EDC650BDFB5E2434FE174DB719BAA440F1DD8 |
SSDEEP | 12:XGGG1Hx2XmHoYlpxYIxYiGYjLNt50bXUt/jsXdBHqU/N2/GRY1:XGL1++oYpx1xFGgLNt/ZQNBHqUF2+RY1 |
TLSH | T1CBF04984164BC9B4C6051B4BECCAED2FE0A1B693D3B1B13A689584D616667C0F24138A |