Key | Value |
---|---|
FileSize | 758766 |
MD5 | C2ABB0DEF5157DC40A568ED6CBB79A55 |
PackageDescription | Test data for HTSlib HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. . This package contains test files and scripts for the HTSlib. |
PackageMaintainer | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> |
PackageName | htslib-test |
PackageSection | science |
PackageVersion | 1.3.2-2 |
SHA-1 | F6CE20B9B6EF70C16A486F2685641C9DFA9E006D |
SHA-256 | C47622735D6C02D37206854E42A89A9D2C87084634C0A7A6C458A73D4798B88D |
hashlookup:children-total | 135 |
hashlookup:trust | 50 |
The searched file hash includes 135 children files known and seen by metalookup. A sample is included below:
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/test/cross_validate.sh |
FileSize | 3204 |
MD5 | 3C0577F86011D8BA2AF4982877503E1E |
SHA-1 | 03AC2D41B6F9510A03C78E743E75BC3B879EE17E |
SHA-256 | 197C56CC92CEF90D49D36AB16BBC4D70DB9D3DEAF6A669799C2F2959E6BD6145 |
SSDEEP | 48:Rcp5EWU0q9+sV1nLgTZuvdwAIRPAo8hAJcAqP8X6hAbxg9HvDCAAnXt/f9Cm:RcpBU0q9+wZgQvVdopNCObxg9vDrA1Ym |
TLSH | T19C61F1E9FD2760397004C0FD5C39E265E640860F788A1A35FC8ED89C6F44660FBBCA98 |
Key | Value |
---|---|
FileName | ./usr/share/doc/staden-io-lib/test/data/c1#clip.sam |
FileSize | 337 |
MD5 | 85FE4FD282E64ADB93B5B7789F2632F0 |
SHA-1 | 06FC71F18C86EE0B3C2D0FB8DD8B7A5605A1C60C |
SHA-256 | F522DE0896725DD706BED7F13E50B51747BDA1CF1819C87B9B754262851186AB |
SSDEEP | 6:hAc050o3MU108N0l3/un9o3GxvYAMsPHPjVA9o3/jV94Un3icV9HkE/f:hnSl1PON6YqvJrvJ/y89EA |
TLSH | T14AE042102F941CA2790D68504E46C8FB99EE110CBD8D19A4DAA8F3003F9DBC06576CAF |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/md5.c |
FileSize | 10554 |
MD5 | 888F9FEC15942C66D86E67CD54B2C144 |
SHA-1 | 07140F784D2E36DA8D0AA75002E712275BB2CB2D |
SHA-256 | 66132EC9DF96A256FC3B63E1F04A3DC547A0AAAFDA0CDFACADE923EC857058C0 |
SSDEEP | 192:44BhLoogOZw4GqoYIXIQBhH50SSN8snGn+EWLrNQEpI2+ZKQYsmKTZMBHoyI:rBhLVtw4GqOH50s+vv7Ib71 |
TLSH | T12422325F978C402BB713D0A2879D9C4A61126517337C386BB45E90BC3BCD073A27EEA5 |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/tabix.c |
FileSize | 19907 |
MD5 | 2C6AE006AAAF4F7C7649285C5FEFAFD7 |
SHA-1 | 0F846D7B7CBF3890D51B01AEE0A76C85DF2C9F3A |
SHA-256 | E94415F220858E5CB87C1B8AACF8A3931706B1A54654C2C496729678C87B5356 |
SSDEEP | 192:hzQHnumIhExRB6oE2B4yFhxucx200oBye0Tnum+sEepokHnSC1PLmwc86WVapRT/:hzGhcExRB6oEjoigRbdyXYaMvLv/fuX8 |
TLSH | T1C992A60C84A732672273417D9B974D24732D80232157ED21BE4CB1D46F908B6AAFDFAC |
Key | Value |
---|---|
FileName | ./usr/share/doc/staden-io-lib/test/data/tag_aux#aux_java.cram |
FileSize | 3774 |
MD5 | E8CCEC1E0AAB90D4FCA7FE5EDE982F1B |
SHA-1 | 100B846E850EC2519AAFF5D9A4DA47922F26D13A |
SHA-256 | C1E9A43A34964FE7E88E4A739F5A4782261623AFEEA13B737FF5B29F4C8F3C71 |
SSDEEP | 48:1llygrUQoYc0bKNbSUBzmUF3vGI0XETTAmzQ2/MtmldddVrdHORoDpUFEy1vVaQq:1GgY3Yct9SUBzmo3vFImEmMggBFlVaF |
TLSH | T160717287EA439C90EA57007485A3BFD41731F590E77F0ACC3C74C62DD121D84AE9A2A6 |
Key | Value |
---|---|
FileName | ./usr/lib/R/site-library/Rhtslib/testdata/test-vcf-hdr-in.vcf |
FileSize | 2024 |
MD5 | E30FAFAF3430F91D0A6DF845F6EE8AC0 |
SHA-1 | 10AC3206B4823242918C5FB15BC7EB9BAA51D8D4 |
SHA-256 | 96C01419AAA466E8BEA034DA890181119FBE933804078E9DC007E30CE3C3F876 |
SSDEEP | 24:wjrAqNuUNpI5b4TqnofmlCmFIjhz4qDX8xcfSN1++kfq/m1i1QY1A/f1e15yu1qW:vq17+4TmtIz4YNq/6rYT |
TLSH | T18E4160943FEEF45A8C9D43423AC17E81593404A0E3850ECA7CAF41AA8FAC58CE265782 |
Key | Value |
---|---|
FileName | ./usr/lib/R/site-library/Rhtslib/testdata/ce#tag_depadded.sam |
FileSize | 1638 |
MD5 | 84EA6309B8666E83048C9D60E6109F9C |
SHA-1 | 11E480BCED6CC18DED94197C01F9CA94C418D534 |
SHA-256 | AE7D6C811493A56646432EBE81D4C184BFD4D2E2D8DE33479D2721831CD8198C |
SSDEEP | 24:lPSjag4srggggggggggBODpggggggggggBOCRPggggggggggG02ggggggggggBOr:lPSjKspiyLxah |
TLSH | T151318BF6F9A13475ABE71D2E1A205BE8281D1F6A1C8B78533CDF701C8AA105B0F54CB9 |
Key | Value |
---|---|
FileName | ./usr/lib/R/site-library/Rhtslib/testdata/xx#large_aux_java.cram |
FileSize | 22668 |
MD5 | 687F33311FA7AB69E03632A172139AD0 |
SHA-1 | 12637E31BE6515F2BC561F95A142640EDDB8F256 |
SHA-256 | AB178652B846EE71FB986C484523BA09C997CBD6E29B9E0EEB6BC8BC1C92150E |
SSDEEP | 384:LIUlK+yY1tPtzFKqfF2+PVytXftDni6viA7dAP9wiM1KCBGQfGq1h0L6uoYk:LIUlK+yYHZG0Rwv1ZEQOEo6Yk |
TLSH | T17EA2D4ABC70C6191E0124BB9F295BBC57606F27967311EE23570E885F4B6CC69CA3B0D |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/cram/zfio.c |
FileSize | 4912 |
MD5 | 55B23BBCB0D394C2FF2BD3A23B1459B2 |
SHA-1 | 147F26AACC987C59C061069B8CE52CF5DAF2554A |
SHA-256 | 339B275C327899EAA5A46A6FCB7EAF870DA38160A21EC30781FC1322454829A2 |
SSDEEP | 96:zOUJ6UJzQ/X23o3zxFyTt44eCY+khvh5JP4CVBsn3Wfh9BqzVDWF0n/yPI4S:zOY6Y+X23o3FKtxEXh5bPcW59BaEPPS |
TLSH | T168A193D78DC921536292EB2E2B875098F51CE42B360EDE01BC4AE0B87F5A81DC57DE94 |
Key | Value |
---|---|
FileName | ./usr/share/htslib-test/hfile.c |
FileSize | 21033 |
MD5 | DC07F467461FAA72D02E3CA326E0FC55 |
SHA-1 | 1583EE98746FC6EA56E47FC4028DE03DBD752C52 |
SHA-256 | 3F035AA13279613FE71509ECB5FEB4E9236D5CB47D9368D6971CA62E2C62E563 |
SSDEEP | 192:0QHn/Kg8sutsP0otVPz34t17XoU60xHiQJQDcjMsTdUYN5WbILIVSJIZIMn7GduR:0Gtutq5WBakKnFuz6kChGnTw5Yu |
TLSH | T14092BA121DB71D225751A6657BD388DCE21D620B213CEA10F84EB2B07F9E02CE7F65AD |